| Amino acid |
| Homocystinuria | Eye, skeletal | Blood clots; long, thin, Marfan syndrome-like stature; dislocated lenses | Mental retardation, psychiatric problems |
| Maple syrup urine disease | CNS | Coma, ketoacidosis, lethargy, failure to thrive, poor feeding | Mental retardation |
| Phenylketonuria | CNS | Hyperactivity, seizures | Mental retardation, autism; risk of executive functioning deficits, slow reaction time, and depression; maternal phenylketonuria |
| Tyrosinemia type I | Liver | Liver disease | Motor deficits |
| Urea cycle |
| Arginase deficiency | CNS | Hyperammonemia | Developmental delay, motor deficits |
| Argininosuccinic acidemia | CNS, liver | Hyperammonemia | Developmental delay, motor deficits, mental retardation, behavioral problems |
| Citrullinemia | CNS | Hyperammonemia | Developmental delay, motor deficits, mental retardation, behavioral problems |
| Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome (ornithine transport defect; secondary urea cycle defect) | CNS | Hyperammonemia | Learning disabilities, speech delay, poor visual-motor skills, irritability, aggression, attention-deficit/hyperactivity disorder |