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Am Fam Physician. 2019;99(1):25-32

Patient information: Handouts on this topic are available at (newborn screening overview, including metabolic disorders) and (PKU).

Author disclosure: No relevant financial affiliations.

Inborn errors of metabolism (IEM), although individually rare, occur in 1 out of every 1,500 births. The first opportunity to detect IEM occurs during preconception counseling, when pregnant women and couples considering future pregnancies can undergo carrier screening. For individuals of all ethnic backgrounds, the screening includes testing for a variety of IEM and non-IEM. For individuals of Ashkenazi Jewish descent, carrier screening, per the American College of Medical Genetics and Genomics, also includes testing for Tay-Sachs disease and four other IEM. Inborn errors of metabolism can present in utero; in newborns; or in children, adolescents, and adults. Some IEM can be detected in utero with the use of ultrasonography. Most commonly, IEM are detected at newborn screening. Expanded newborn screening, which now includes 34 core conditions, allows for diagnosis in the newborn period and provides the opportunity for early institution of available treatments. However, some newborns present with symptoms consistent with an IEM before the availability of pending newborn screening results or present with symptoms attributable to an IEM not detectable with screening. Such situations are medical emergencies requiring immediate consultation with a metabolic specialist. If a delay occurs in obtaining consultation, initial treatment involves discontinuing feeding and providing high-rate glucose infusions. Some IEM present later in life. Children may develop and present with dysmorphic facial features. In some cases, symptoms may not appear until adolescence or adulthood when patients have residual enzyme activity that allows for slow accumulation of toxic molecules over time. Long-term treatments are effective for some IEM. Treatments include dietary restrictions and enzyme-replacement therapies.

Inborn errors of metabolism (IEM) are genetic conditions that block metabolic pathways involved in the breakdown of nutrients and the generation of energy. Perturbation of these metabolic pathways results in a spectrum of clinical findings affecting multiple organ systems. The diagnosis of IEM is challenging because the clinical presentation is often nonspecific; however, more IEM are now included in recommended newborn screening, which helps for early diagnosis. Therefore, knowledge of IEM has become essential for physicians. Although individual IEM are rare, the combined incidence is 1 out of every 1,500 births.1 This review discusses IEM disorders from preconception to adulthood.


The American College of Obstetricians and Gynecologists has classified expanded carrier screening as an acceptable pre-pregnancy and prenatal screening strategy for all patients. Expanded screening refers to concurrently screening for as many as several hundred conditions, including both IEM and non-IEM.

The initial treatment for all newborns and children with a suspected IEM comprises ending the buildup of toxic metabolites by discontinuing feeds and by preventing catabolism by giving glucose at a high infusion rate (5 to 10 g per kg per hour).

Clinical recommendationStrength of recommendationReferencesComments
The option of carrier screening for IEM should be discussed when providing preconception counseling to women considering pregnancy.C7 Consensus
Newborn screening is recommended for 34 disorders, including 25 IEM.C14, 15 Consensus
An IEM disorder should always be considered in the differential diagnosis in infants being evaluated or treated for suspected infection, especially if the infant does not respond to antibiotics as expected.C24, 25 Expert opinion
Physicians should consult with a metabolic specialist on an emergency basis upon diagnosis of IEM in a newborn.C16, 18 Expert opinion
The ACMG ACTion (ACT) sheets and algorithms should be used to further determine appropriate action after a positive newborn screen, particularly if there is a delay in contacting a metabolic specialist.C16, 18 Expert opinion



The first opportunity to address IEM occurs with testing of asymptomatic future parents. Certain populations have increased carrier rates for IEM, and preconception screening has been shown to decrease disease prevalence.

Carrier testing first began in the Ashkenazi (Eastern European) Jewish population in the early 1970s with preconception screening for carriers of Tay-Sachs disease.2,3 With the advent of carrier screening, the incidence of Tay-Sachs disease decreased by 90% between 1970 and 1993 in the Jewish populations of North America.3 The American College of Obstetricians and Gynecologists (ACOG) and the American College of Medical Genetics and Genomics (ACMG) have expanded the list of recommended carrier testing for IEM beyond Tay-Sachs disease in the Ashkenazi Jewish population (Table 1).46

DiseaseACMG*ACOG§Carrier frequency||Sensitivity
Gaucher diseaseRecommendedConsider1/1889% to 96%
Tay-Sachs diseaseRecommendedRecommended1/3195% to 97%
Canavan diseaseRecommendedRecommended1/4094% to 98%
Familial hyperinsulinismConsider1/52
Glycogen storage disease type 1Consider1/71
Maple syrup urine diseaseConsider1/81
Niemann-Pick disease type ARecommendedConsider1/9092%
Mucolipidosis IVRecommendedConsider1/12795% to 97%

In addition, ACOG has recently classified expanded carrier screening as an acceptable pre-pregnancy and prenatal screening strategy for all patients.7 Expanded screening refers to concurrent screening for as many as several hundred conditions—both IEM and non-IEM—and is more accessible because of the decreased cost of DNA analysis.

Because of the previous recommendations and decreased testing costs, physicians in family medicine, obstetrics, and maternal fetal medicine are now able to offer preconception screening for inherited disorders; however, preconception screening detects only the most common DNA variants associated with a particular IEM disorder. Thus, a normal screening test does not always eliminate the possibility of an IEM disorder.


IEM disorder screening began in the 1960s with Dr. Robert Guthrie's development of a screening test for phenylketonuria (PKU) from a blood spot8; early knowledge of the disorder allowed for treatment of PKU with diet restriction of the amino acid phenylalanine.9 Expanded newborn screening beyond PKU has occurred largely as a result of the introduction of tandem mass spectrometry, which allows for testing of multiple metabolic conditions from a single blood spot.10,11

Sensitivity for newborn screening using tandem mass spectrometry is 99.9%, and specificities range from 99.9% to 99.99%.12,13 Because of the low prevalence of these conditions, however, positive predictive values range from 26% to 37%.12,13

The Secretary of Health and Human Services Advisory Committee on Heritable Disorders in Newborns and Children created the Recommended Uniform Screening Panel14 to indicate the conditions for which screening should occur.15 The panel lists 34 core conditions, 25 of which are IEM15 (Table 215,16 ). The Recommended Uniform Screening Panel also lists 26 secondary conditions that can be detected on tandem mass spectrometry that are in the differential diagnosis of the core disorders.14 A number of criteria must be met for a disease to be added to the Recommended Uniform Screening Panel, including the ability of U.S. states to conduct the screening, evidence of a net benefit from screening, and availability of effective treatments. 17 Individual U.S. states control newborn screening; not all U.S. states screen for all core and secondary conditions.14,15

Condition listed by categoryClinical presentation
Amino acid disorder
Classic phenylketonuriaCognitive impairment, seizures, spasticity
HomocystinuriaMarfan-like appearance, lens dislocation, cognitive impairment, thromboembolism
Maple syrup urine diseaseProgressive encephalopathy
Tyrosinemia, type ILiver failure, septicemia, hypoglycemia, Fanconi syndrome (renal tubulopathy)
Fatty acid oxidation disorder
Carnitine uptake defect/carnitine transport defectHypoketotic hypoglycemia, cardiomyopathy, liver disease
Long-chain L-3 hydroxyacyl-CoA dehydrogenase deficiencyHypoketotic hypoglycemia, cardiomyopathy, liver disease, recurrent rhabdomyolysis
Medium-chain Acyl-CoA dehydrogenase deficiencyReye-like syndrome, metabolic crisis after fasting with lethargy, nausea, vomiting, coma
Trifunctional protein deficiencyHypoketotic hypoglycemia, cardiomyopathy, liver disease, recurrent rhabdomyolysis
Very long-chain Acyl-CoA dehydrogenase deficiencyHypoketotic hypoglycemia, cardiomyopathy, liver disease, recurrent rhabdomyolysis
Organic acidemia
3-hydroxy-3-methylglutaric aciduriaMetabolic decompensation triggered by periods of fasting or infections
3-methylcrotonyl-CoA carboxylase deficiencyEncephalopathy, ketoacidosis, hyperammonemia
ß-ketothiolase deficiencyKetoacidotic attacks, sometimes leading to coma
Glutaric acidemia type IMacrocephaly, encephalopathy
Holocarboxylase synthetase deficiencyMetabolic acidosis, neurologic defects, skin rash
Isovaleric acidemiaEncephalopathy, ketoacidosis, hyperammonemia
Methylmalonic acidemia (cobalamin disorders)Encephalopathy, ketoacidosis, hyperammonemia
Methylmalonic acidemia (methylmalonyl-CoA mutase)Encephalopathy, ketoacidosis, hyperammonemia
Propionic acidemiaEncephalopathy, ketoacidosis, hyperammonemia
Urea cycle disorders
Argininosuccinic aciduriaNeurologic and liver abnormalities
Citrullinemia type IMild hyperammonemia, failure to thrive
Biotinidase deficiencyMetabolic acidosis, neurologic defects, skin rash
Classic galactosemiaLiver and renal failure after start of milk feeds in first week of life
Glycogen storage disease type II (Pompe disease)Failure to thrive, cardiomyopathy, hypotonia
Mucopolysaccharidosis IHydrocephalus, cognitive impairment, coarse facies
X-linked adrenoleukodystrophyIntellectual regression, leukodystrophy, adrenal insufficiency

Many IEM in newborns are medical emergencies, and physicians should take immediate action if a positive newborn screen is received. The following actions should be taken: (1) contact the parents of the newborn to inform them of the situation; (2) assess the newborn's clinical condition; and (3) provide prompt referral to a metabolic specialist.16,18 The ACMG provides ACTion (ACT) sheet resources that describe the short-term actions a health professional should follow in communicating with the family and in determining the appropriate steps for an infant who has screened positive for an IEM disorder (see Medical Genetic Practice Resources at

Clinical Presentation

Various IEM can present throughout a patient's life span, from the prenatal period through adulthood.


Some IEM present in pregnancy, with abnormalities detected on ultrasound. For example, hydrops fetalis (fluid accumulation in multiple body areas, such as ascites, pleural or pericardial effusions, or skin edema) may be seen on prenatal ultrasonography after 26 weeks' gestation in lysosomal storage diseases. Lysosomal storage diseases are a group of disorders that result from an enzyme deficiency that blocks the ability of lysosomes to digest large cellular molecules. The most common lysosomal storage diseases are mucopolysaccharidosis VII, Gaucher disease, and GM1 gangliosidosis.19 Other IEM presenting in utero on ultrasonograpy during the second trimester are shown in Table 3.19,20

ConditionUltrasound findings

IUGRBrain anomaliesHydrops fetalisRenal anomalyHyperechogenic colonPolyhydramniosLiver steatosisLeft ventricular noncompaction
Lysosomal storage diseasesX
Cholesterol synthesis disorders (Antley-Bixler syndrome, Greenberg dysplasia, CHILD syndrome)X
Glycogen storage disease type IVXX
Peroxisomal disordersXX
Fatty acid oxidation disordersXXX
Organic acidemia (Barth syndrome, methylmalonic acidemia, holocarboxylase synthetase deficiency, mevalonic aciduria)XXXX
Amino acidopathiesXXX
Congenital disorders of glycosylationXX

Maternal history, examination, and laboratory findings may be used in addition to fetal ultrasonography for indicators of IEM for two particular conditions. In ornithine transcarbamylase, the pregnant mother may be symptomatic with hyperammonemia, coma, and psychiatric symptoms.21 In long-chain hydroxyacyl dehydrogenase deficiency, the mother can present with an acute fatty liver; hyperemesis; and a syndrome with symptoms of hemolysis, elevated liver enzymes, and low platelet count.22

For all prenatal genetic diseases, whether detected with ultrasonography or suspected from clinical findings, a definitive diagnosis can be accomplished with chorionic villi sampling or amniocentesis.23


Many IEM present in the first month of life. Often, the newborn will initially appear healthy because metabolites occurring in the IEM disorder have been cleared via placental circulation during the intrauterine period. Those metabolites accumulate only after birth; thus, a symptom-free period after birth is a vital component of the medical history.16

Symptoms of IEM in newborns are typically nonspecific, such as lethargy, poor feeding, vomiting, abnormal breathing, seizures, and/or hypotonia. Although these signs also signal infection (including sepsis), which is more common, IEM must be considered in the differential diagnosis. Additional findings that should raise concern about the possibility of an IEM disorder are metabolic acidosis, unexplained hypoglycemia, constitutional liver dysfunction, and encephalopathy.16

All newborns being evaluated for these presentations should have an ammonia level and urine ketone tests performed in addition to the evaluation for possible infection or sepsis. If acidosis is a concern (i.e., urine pH is low, respiratory rate is abnormal), a confirmation blood gas measurement should be performed, even if the pulse oximetry is normal. If any one of these tests is abnormal or if the newborn does not respond to antibiotics as expected,24,25 an IEM disorder should be considered, and a metabolic specialist should be consulted. If obtaining support from a metabolic specialist is delayed, plasma amino acids, acylcarnitine profile, and urine organic acids should be measured (Table 416 ).

TestSignificanceExamples of inborn errors of metabolism associated with abnormal values
KetonesSign of ketosisKetouria found in organic acidemias, hypoketotic hypoglycemia in fatty acid oxidation disorders
Organic acidsElevated organic acids in urine especially when patient is in a fasting or catabolic stateAmino acidopathies, organic acidemias, fatty acid oxidation disorders
Electrolytes, creatine kinase, creatinineAcid-base analysisAnion gap in organic acidemias (i.e., methylmalonic acidemia and propionic acidemia)
Creatine kinaseCardiomyopathyFatty acid oxidation disorders, organic acidemias, mitochondrial disorders, glycogen storage disorders
Coagulation studies, alanine aminotransferase, aspartate aminotransferaseLiver diseaseFatty acid oxidation disorders, tyrosinemia type I, mitochondrial defects, hereditary fructose intolerance
GlucoseHypoglycemiaGlycogen storage diseases and fatty acid oxidation disorders
AmmoniaElevated levels cause encephalopathyUrea cycle disorders, organic acidemias
Arterial/venous gas (pH, bicarbonate, CO2)pH, acid base analysisAcidosis (organic acidemias), elevated pH (occasionally in urea cycle disorders)
AcylcarnitinesQuantifies carbon chains esterified to carnitineOrganic acidemias and fatty acid oxidation disorders
Amino acidsElevated amino acidlevelsMaple syrup urine disease, phenylketonuria, tyrosinemia type 1, some urea cycle disorders, elevated glycine in organic acidemias
LactateHypoxia and tissue perfusion problemsMitochondrial disorders, pyruvate dehydrogenase or carboxylase deficiency, organic acidemias, glycogen storage diseases

Whereas many IEM present after a period during which the newborn appears healthy, some IEM may clinically present before the physician has received the IEM disorder screening test results. Additionally, a normal newborn metabolic screen should not deter physicians from performing a metabolic workup in a sick newborn because not all variations of metabolic diseases are covered in newborn screening tests.


Most conditions that present in the newborn period can present during childhood in a similar or less severe manner and in some cases are linked with dysmorphic physical examination findings (Figure 1).2628 Two of the most well-known examples are lysosomal storage disorders, Hunter syndrome and Hurler syndrome.29,30 The dysmorphic features may not present at birth, but they become more pronounced over time as the storage molecule accumulates.


Primary care physicians occasionally encounter IEM in adolescents and adults (Table 531 ). Some children with IEM are living longer because of new treatments and a better understanding of how to avoid metabolic decompensation (e.g., avoiding high-protein diets in organic acidemia and urea cycle disorders). Also, some IEM have their onset in adults; for example, adult-onset lysosomal storage disorders. Patients with these IEM have residual enzyme activity that allows for slow accumulation of toxic molecules over time, and symptoms may not appear until adulthood. Some of these disorders (e.g., Gaucher disease) can be treated with enzyme replacement therapy.32

ConditionIncidencePathophysiologyChild presentationAdult/adolescent presentation
Hemochromatosis1:200 to 1:400 in CaucasiansHigh absorption of ironRare before age 40Liver disease, diabetes mellitus, renal failure, arthritis
Gaucher disease type 11:855 (Ashkenazi Jewish)Deficiency of lysosomal enzyme glucocerebrosidaseBone disease, hepatosplenomegaly, anemia, thrombocytopeniaSimilar to early presentation with the addition of osteoporosis and Parkinson disease
X-linked adrenoleukodystrophy1:20,000 to 1:50,000Peroxisomal disorder; very long-chain fatty acid accumulation resulting in destruction of myelin and adrenal cortexVisual and hearing impairment, leukodystrophy, cerebellar ataxia, dementiaMales: onset 20 to 30 years of age with gait disturbance, spastic paraparesis, dementia, psychosis, adrenal insufficiency
Females: onset after 30 years of age, spastic paraparesis, peripheral neuropathy
Wilson disease1:30,000Copper accumulation disorderLiver failureTremor, Parkinson-like symptoms, dysarthria, renal failure, dementia
3-methylcrotonyl CoA carboxylase deficiency1:36,000Leucine metabolism disorderInfants present with seizures and feeding difficultiesAsymptomatic mother identified after her newborn has abnormal newborn screening test because of mother's metabolites in infant's blood
Fabry disease1:50,000 to 1:117,000 malesX-linked lysosomal storage disease from deficiency of the enzyme alpha-galactosidase A (α-Gal A)Males with less than 1% α-Gal A present in childhood or adolescence with acroparesthesia, angiokeratoma, renal and heart diseaseHeterozygous females typically present later in life than males with milder symptoms
Ornithine transcarbamylase deficiency1:70,000Most common urea cycle disorder; X-linked inheritanceOften fatal in newborn malesAdolescent females with dietary protein aversion, abdominal pain, and headaches
Homocystinuria1:200,000Reduced activity of the cystathionine ß-synthase enzyme, which is involved in the conversion of the essential amino acid methionine to another amino acid (cysteine)Developmental delayOsteoporosis, dislocated ocular lenses, thrombophilia
Carnitine palmitoyltransferase II deficiencyRareFatty acid metabolism disorderNewborns present with cardiomyopathy and liver failureRhabdomyolysis, muscle weakness, and myopathy in adolescents and adults after physical activity
GM2 gangliosidosis (Tay-Sachs disease and Sandhoff disease)RareLysosomal storage diseaseProgressive weakness, decreased attentiveness, blindness, and death in year 2 or 3 of lifeMotor neuron disease, dystonia, cerebellar degeneration, bipolar disease, psychosis
PorphyriaRareAbnormally high levels of porphyrins and porphyrin pre-cursors because of deficiency of the enzyme hydroxymethylbilane synthaseRare before pubertySeizures, extremity pain, chest pain, abdominal pain, photosensitivity


When physicians encounter a newborn or infant with acute decompensation that is attributable to an IEM disorder, the most important intervention is arranging urgent transfer to a center with a metabolic specialist.16,18 While awaiting transfer, the initial treatment is the same for all newborns and children with a suspected IEM disorder: stopping the buildup of toxic metabolites by discontinuing feedings and preventing catabolism by providing glucose at a high infusion rate (5 to 10 g per kg per hour).33,34 This is the equivalent of 10% dextrose in an electrolyte solution at 1.5 times maintenance rate or 5% dextrose at twice the maintenance rate. If this infusion leads to an elevation of serum lactate levels, it suggests the possibility of a mitochondrial disorder. If this occurs, the 10% dextrose fluid should be replaced with a lower glucose load, such as 5% dextrose.16

Although long-term treatment of IEM is beyond the scope of this review, note that chronic therapy is available for many IEM. The best known examples that respond to long-term management are the prototypical IEM disorder, PKU, and Gaucher disease. PKU can be treated with a restricted phenylalanine diet, and Gaucher disease can be treated with enzyme replacement. This demonstrates why accurate diagnosis is important.

This article updates a previous article on this topic by Raghuveer, et al.35

Data Sources: A PubMed search was completed in Clinical Queries using the key terms inherited metabolic disorders, genetic carrier screening, prenatal genetic testing, newborn screening, inborn errors of metabolism, and adults. The search included meta-analyses, clinical trials, and reviews. Also searched were the Agency for Healthcare Research and Quality evidence reports, the Cochrane database, the National Guideline Clear-inghouse, Bandolier, and Essential Evidence Plus. Search date: May 1, 2017.

The opinions and assertions contained herein are the private views of the authors and are not to be construed as official or as reflecting the views of the U.S. Department of Health and Human Services.

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